Providencia spp.

Source of isolates submitted to the Providencia spp. database

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This MLST scheme is based on a MLSA scheme described in Juneja & Lazzaro 2009 Int J Syst Evol Microbiol 59:1108-1111. The scheme is curated by kaylanne.montenegrofiocruz.br (Kaylanne Montenegro).

There is also a MLST scheme specific for P. stuartii. This is described in Arcari et al. 2024 Front Microbiol 15:1493621. The scheme is curated by gabriele.arcariuninsubria.it (Gabriele Arcari) and valerio.capitaniuniroma1.it (Valerio Capitani.)

The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.